[Python] How to set a persistent SQLite3 database?

No. You set the OrganizationName in the [X-Sailjail] section of the .desktop file. And you also set the ApplicationName there. Then you can create your database in .local/share/orgname/appname/. The Group definition in .yaml has nothing to do with it. Actually, it has nothing to do with anything and you should just remove it.

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